Integration of lead optimization with crystallography for a membrane-bound ion channel target: discovery of a new class of AMPA receptor positive allosteric modulators

J Med Chem. 2011 Jan 13;54(1):78-94. doi: 10.1021/jm100679e. Epub 2010 Dec 3.

Abstract

A novel series of AMPAR positive modulators is described that were identified by high throughput screening. The molecules of the series have been optimized from a high quality starting point hit to afford excellent developability, tolerability, and efficacy profiles, leading to identification of a clinical candidate. Unusually for an ion channel target, this optimization was integrated with regular generation of ligand-bound crystal structures and uncovered a novel chemotype with a unique and highly conserved mode of interaction via a trifluoromethyl group.

MeSH terms

  • Allosteric Regulation
  • Animals
  • Calcium / metabolism
  • Crystallography, X-Ray
  • Dogs
  • High-Throughput Screening Assays
  • Humans
  • In Vitro Techniques
  • Indazoles / chemical synthesis*
  • Indazoles / pharmacokinetics
  • Indazoles / pharmacology
  • Ligands
  • Macaca fascicularis
  • Male
  • Microsomes, Liver / metabolism
  • Models, Molecular
  • Molecular Conformation
  • Patch-Clamp Techniques
  • Protein Multimerization
  • Rats
  • Rats, Sprague-Dawley
  • Receptors, AMPA / chemistry
  • Receptors, AMPA / physiology*
  • Recombinant Proteins / chemistry
  • Solubility
  • Structure-Activity Relationship
  • Swine
  • Swine, Miniature

Substances

  • Indazoles
  • Ligands
  • Receptors, AMPA
  • Recombinant Proteins
  • Calcium

Associated data

  • PDB/2XX7
  • PDB/2XX8
  • PDB/2XX9
  • PDB/2XXH
  • PDB/2XXI